PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g039280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 389aa    MW: 43454.5 Da    PI: 9.7104
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g039280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.8e-06628123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C+k F+r  nL+ H r H
  Csa09g039280.1  6 FICEICNKGFKRDQNLQLHRRGH 28
                    89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.95E-8528No hitNo description
Gene3DG3DSA:3.30.160.604.3E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.866628IPR007087Zinc finger, C2H2
PfamPF121711.4E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.011628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355974878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-471104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.95E-878103No hitNo description
SMARTSM0035520083103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATNRFICEI CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK DQIKKKVYIC PEKTCVHHDP  60
GRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVMSDWKA HSKICGTREY RCDCGTLFSR  120
KDSFITHRAF CDALAEESAR FVSVPPAAAS ATPAYLHNAP DAEVNLGNIN ENHQHGHTTS  180
SQLDQPVFNN QRQTFLGQTF TDQLPIQPNV FASPSTRSAS DSLQNLWHLQ GQSSHQWLLN  240
ENNNNNILQR GISKNEEEHE IKKVATSGSL FSSEAHNNAN NYSQNGGQIA SMSATALLQK  300
AAQMGSKRSS SSLNNSKAFG LMSNTSIFNN KQTENMKTTE VDEGGFTRDF LGVGSQHRTW  360
PLLMVNRNLL DSSPPATTDG TPTPDRNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425953.10.0PREDICTED: zinc finger protein JACKDAW-like
RefseqXP_010425952.10.0PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ944L30.0IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLR0HJJ20.0R0HJJ2_9BRAS; Uncharacterized protein
STRINGscaffold_501386.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-174C2H2-like zinc finger protein